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Namehelp_outline
a 5ʼ-end 5ʼ-dephospho-2ʼ-deoxyribonucleotidyl-2ʼ-deoxyribonucleotide in single-stranded DNA
Identifier
RHEA-COMP:19702
Reactive part
help_outline
- Name help_outline a 5'-end 5'-dephospho-2'-deoxyribonucleotidyl-2'-deoxyribonucleotide residue Identifier CHEBI:231873 Charge -1 Formula C10H15O8PR2 SMILEShelp_outline *[C@@H]1O[C@H](CO)[C@H](C1)OP(OC[C@H]2O[C@@H](*)C[C@@H]2O*)([O-])=O 2D coordinates Mol file for the small molecule Search links Involved in 1 reaction(s) Find molecules that contain or resemble this structure Find proteins in UniProtKB for this molecule
- Name help_outline H2O Identifier CHEBI:15377 (CAS: 7732-18-5) help_outline Charge 0 Formula H2O InChIKeyhelp_outline XLYOFNOQVPJJNP-UHFFFAOYSA-N SMILEShelp_outline [H]O[H] 2D coordinates Mol file for the small molecule Search links Involved in 6,485 reaction(s) Find molecules that contain or resemble this structure Find proteins in UniProtKB for this molecule
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Namehelp_outline
a 5ʼ-end dephospho-2ʼ-deoxyribonucleoside in single-stranded DNA
Identifier
RHEA-COMP:19701
Reactive part
help_outline
- Name help_outline 5'-end 2'-deoxyribonucleoside Identifier CHEBI:136416 Charge 0 Formula C5H8O3R SMILEShelp_outline OC[C@H]1O[C@@H](*)C[C@@H]1O* 2D coordinates Mol file for the small molecule Search links Involved in 4 reaction(s) Find molecules that contain or resemble this structure Find proteins in UniProtKB for this molecule
- Name help_outline a 2'-deoxyribonucleoside 3'-phosphate Identifier CHEBI:131705 Charge -2 Formula C5H8O6PR SMILEShelp_outline [C@H]1(O[C@H](CO)[C@H](C1)OP(=O)([O-])[O-])* 2D coordinates Mol file for the small molecule Search links Involved in 3 reaction(s) Find molecules that contain or resemble this structure Find proteins in UniProtKB for this molecule
- Name help_outline H+ Identifier CHEBI:15378 Charge 1 Formula H InChIKeyhelp_outline GPRLSGONYQIRFK-UHFFFAOYSA-N SMILEShelp_outline [H+] 2D coordinates Mol file for the small molecule Search links Involved in 9,932 reaction(s) Find molecules that contain or resemble this structure Find proteins in UniProtKB for this molecule
Cross-references
| RHEA:81379 | RHEA:81380 | RHEA:81381 | RHEA:81382 | |
|---|---|---|---|---|
| Reaction direction help_outline | undefined | left-to-right | right-to-left | bidirectional |
| UniProtKB help_outline |
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Publications
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PLD3 and PLD4 are single-stranded acid exonucleases that regulate endosomal nucleic-acid sensing.
Gavin A.L., Huang D., Huber C., Maartensson A., Tardif V., Skog P.D., Blane T.R., Thinnes T.C., Osborn K., Chong H.S., Kargaran F., Kimm P., Zeitjian A., Sielski R.L., Briggs M., Schulz S.R., Zarpellon A., Cravatt B., Pang E.S., Teijaro J., de la Torre J.C., O'Keeffe M., Hochrein H., Damme M., Teyton L., Lawson B.R., Nemazee D.
The sensing of microbial genetic material by leukocytes often elicits beneficial pro-inflammatory cytokines, but dysregulated responses can cause severe pathogenesis. Genome-wide association studies have linked the gene encoding phospholipase D3 (PLD3) to Alzheimer's disease and have linked PLD4 t ... >> More
The sensing of microbial genetic material by leukocytes often elicits beneficial pro-inflammatory cytokines, but dysregulated responses can cause severe pathogenesis. Genome-wide association studies have linked the gene encoding phospholipase D3 (PLD3) to Alzheimer's disease and have linked PLD4 to rheumatoid arthritis and systemic sclerosis. PLD3 and PLD4 are endolysosomal proteins whose functions are obscure. Here, PLD4-deficient mice were found to have an inflammatory disease, marked by elevated levels of interferon-γ (IFN-γ) and splenomegaly. These phenotypes were traced to altered responsiveness of PLD4-deficient dendritic cells to ligands of the single-stranded DNA sensor TLR9. Macrophages from PLD3-deficient mice also had exaggerated TLR9 responses. Although PLD4 and PLD3 were presumed to be phospholipases, we found that they are 5' exonucleases, probably identical to spleen phosphodiesterase, that break down TLR9 ligands. Mice deficient in both PLD3 and PLD4 developed lethal liver inflammation in early life, which indicates that both enzymes are needed to regulate inflammatory cytokine responses via the degradation of nucleic acids. << Less